PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold00102-abinit-gene-1.3-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 272aa    MW: 29122.4 Da    PI: 5.5206
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold00102-abinit-gene-1.3-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.54.3e-15109156355
                                                   AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                                           y+G+r ++ +g+Wv+eIr+p++   ++r++lg+f  +e+Aa+a++ a+++l+g
  augustus_masked-scaffold00102-abinit-gene-1.3-mRNA-1 109 YRGIR-CR-SGKWVSEIREPRK---TTRIWLGTFPIPEMAAAAYDVAALALKG 156
                                                           9***9.55.6*********843...5************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.47E-17108165IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-25108164IPR001471AP2/ERF domain
SMARTSM003801.5E-26108170IPR001471AP2/ERF domain
PROSITE profilePS5103219.691108164IPR001471AP2/ERF domain
CDDcd000181.57E-15109164No hitNo description
PRINTSPR003672.8E-6109120IPR001471AP2/ERF domain
PfamPF008471.6E-8109156IPR001471AP2/ERF domain
PRINTSPR003672.8E-6146166IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MADHPNIPTN IHQLDQPHQQ PAALPPLDPS SQLPPQLQLV QVQHSFPFHT CDSPSPTCDS  60
PSSNQYQPQP QPQPQPQPLK SPKPTTTTTT MASSPSSSSS TTSGKHPMYR GIRCRSGKWV  120
SEIREPRKTT RIWLGTFPIP EMAAAAYDVA ALALKGSDAV LNFPGSVATY PIPASTSSVD  180
IRNAATAAAA LKKAELSESQ SQLQQLQNDS STMNAGWTSS SGTEFLDEEA IFDMPSLLVD  240
MAEGMLVSPP RINSSHDSPA NSDGGGSLWG YF
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007040122.11e-70Integrase-type DNA-binding superfamily protein
SwissprotQ9FJ904e-53ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A061G5E71e-70A0A061G5E7_THECC; Integrase-type DNA-binding superfamily protein
STRINGPOPTR_0003s12120.12e-69(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.11e-44ERF family protein